ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5zaxA1 - ECOD Domain | ECOD

ECOD/Domains/e5zaxA1

e5zaxA1

UID: 002429044

PDB

Range: A:2-198
PDB: 5ZAX chain A(all domains)
UniProt: Q5SHX3 (all domains)
Gene: tmk

Molecule: Thymidylate kinase

3D Structure

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Related Domains

Browse other domains in Thymidylate_kin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyThymidylate_kin(2004.1.1.79)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Thymidine-5'- DiphosphateTYD
drugDrugBank DB03103

Pfam Families

PF02223Thymidylate_kin

Thymidylate kinase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5ZAX RCSB PDB: 5ZAX PDBe: 5ZAX UniProt: Q5SHX3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chloride ion

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.