ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5oc4A1 - ECOD Domain | ECOD

ECOD/Domains/e5oc4A1

e5oc4A1

UID: 002429392

PDB

Range: A:347-442
PDB: 5OC4 chain A(all domains)
UniProt: Q9NX74 (all domains)
Gene: DUS2

Molecule: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like

3D Structure

Loading viewer...

Related Domains

Browse other domains in dsrm →

Classification

AArchitecturea+b two layers(a.11)

XX-groupdsRBD-like(330)

HH-groupdsRNA-binding domain-like(330.1)

TT-groupdsRNA-binding domain-like(330.1.1)

FFamilydsrm(330.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives (Glycerin, Cacodylate ion)

GlycerinGOL
DrugBank DB09462
Cacodylate ionCAC

Pfam Families

Double-stranded RNA binding motif

ClanCL0196DSRM

External Links

ECOD PDB View: 5OC4 RCSB PDB: 5OC4 PDBe: 5OC4 UniProt: Q9NX74

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.