ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6du0A1 - ECOD Domain | ECOD

ECOD/Domains/e6du0A1

e6du0A1

UID: 002430405

PDB

Range: A:317-512
PDB: 6DU0 chain A(all domains)
UniProt: P20457 (all domains)
Gene: PRI2

Molecule: DNA primase large subunit

3D Structure

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Related Domains

Browse other domains in DNA_primase_lrg →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupCryptochrome/photolyase FAD-binding domain-related(182)

HH-groupCryptochrome/photolyase FAD-binding domain-related(182.1)

TT-groupFe-S cluster domain of DNA primase(182.1.2)

FFamilyDNA_primase_lrg(182.1.2.1)

Ligands

in contact, ≤ 4 Å

Iron/sulfur clusterSF4

+ 2 additives (Glycerin, (4r)-2-Methylpentane-2,4-Diol)

GlycerinGOL
DrugBank DB09462
(4r)-2-Methylpentane-2,4-DiolMPD

Pfam Families

PF04104DNA_primase_lrg

Eukaryotic and archaeal DNA primase, large subunit C-terminal domain

ClanCL0242DNA_primase_lrg

External Links

ECOD PDB View: 6DU0 RCSB PDB: 6DU0 PDBe: 6DU0 UniProt: P20457

Downloads

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DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.