ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ac9B1 - ECOD Domain | ECOD

ECOD/Domains/e6ac9B1

e6ac9B1

UID: 002431123

PDB

Range: B:21-341
PDB: 6AC9 chain B(all domains)
UniProt: Q99986 (all domains)
Gene: VRK1

Molecule: Serine/threonine-protein kinase VRK1

3D Structure

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Related Domains

Browse other domains in Pkinase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupProtein kinase(206.1.1)

FFamilyPkinase(206.1.1.1)

Ligands

in contact, ≤ 4 Å

Phosphoaminophosphonic acid-adenylate esterANP
Chloride ionCL
Magnesium ionMG

Pfam Families

PF00069Pkinase

Protein kinase domain

ClanCL0016PKinase

External Links

ECOD PDB View: 6AC9 RCSB PDB: 6AC9 PDBe: 6AC9 UniProt: Q99986

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 3 additives (Glycerin, Sulfate ion, Tetraethylene glycol)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.