ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ndrB1 - ECOD Domain | ECOD

ECOD/Domains/e6ndrB1

e6ndrB1

UID: 002433313

PDB

Range: B:0-187
PDB: 6NDR chain B(all domains)
UniProt: Q5ZXH5 (all domains)
Gene: lpg0756

Molecule: dTDP-4-dehydrorhamnose 3,5-epimerase

3D Structure

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Related Domains

Browse other domains in dTDP_sugar_isom →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilydTDP_sugar_isom(10.12.1.4)

Ligands

in contact, ≤ 4 Å

DTDP-4-KETO-L-RHAMNOSETDO

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Pfam Families

PF00908dTDP_sugar_isom

dTDP-4-dehydrorhamnose 3,5-epimerase

ClanCL0029Cupin

External Links

ECOD PDB View: 6NDR RCSB PDB: 6NDR PDBe: 6NDR UniProt: Q5ZXH5

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.