ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5zvjA1 - ECOD Domain | ECOD

ECOD/Domains/e5zvjA1

e5zvjA1

UID: 002434121

PDB

Range: A:223-413
PDB: 5ZVJ chain A(all domains)
UniProt: O06291 (all domains)
Gene: htrA1

Molecule: Serine protease

3D Structure

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Related Domains

Browse other domains in Trypsin_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyTrypsin_2(1.1.5.33)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Tromethamine)

TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13365Trypsin_2

Trypsin-like peptidase domain

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 5ZVJ RCSB PDB: 5ZVJ PDBe: 5ZVJ UniProt: O06291

Downloads

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