ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5zvbA1 - ECOD Domain | ECOD

ECOD/Domains/e5zvbA1

e5zvbA1

UID: 002434133

PDB

Range: A:218-373
PDB: 5ZVB chain A(all domains)
UniProt: Q8IUX4 (all domains)
Gene: APOBEC3F

Molecule: APEBEC3F/ssDNA-T9

3D Structure

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Related Domains

Browse other domains in NAD2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCytidine deaminase-like(2492)

HH-groupCytidine deaminase-like(2492.1)

TT-groupCytidine deaminase-like(2492.1.1)

FFamilyNAD2(2492.1.1.23)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Cacodylate ion)

Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF18782APOBEC3

APOBEC3, cytosine deaminase domain

ClanCL0109CDA

External Links

ECOD PDB View: 5ZVB RCSB PDB: 5ZVB PDBe: 5ZVB UniProt: Q8IUX4

Downloads

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