ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5w9aA1 - ECOD Domain | ECOD

ECOD/Domains/e5w9aA1

e5w9aA1

UID: 002438863

PDB

Range: A:95-136
PDB: 5W9A chain A(all domains)
UniProt: Q0PF16 (all domains)
Gene: TRIM5

Molecule: Tripartite motif-containing protein 5

3D Structure

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Related Domains

Browse other domains in zf-B_box →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupB-box zinc-binding domain-like(904)

HH-groupB-box zinc-binding domain(904.1)

TT-groupB-box zinc-binding domain(904.1.1)

FFamilyzf-B_box(904.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00643zf-B_box

B-box zinc finger

ClanCL0782BBOX

External Links

ECOD PDB View: 5W9A RCSB PDB: 5W9A PDBe: 5W9A UniProt: Q0PF16

Downloads

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