ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6bpyB2 - ECOD Domain | ECOD

ECOD/Domains/e6bpyB2

e6bpyB2

UID: 002438875

PDB

Range: B:1-128,B:256-326
PDB: 6BPY chain B(all domains)
UniProt: A0A229Y1X4 (all domains)
Gene: TRR1

Molecule: Thioredoxin reductase

3D Structure

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Related Domains

Browse other domains in Pyr_redox_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyPyr_redox_2(2003.1.2.24)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147

+ 3 additives (Formic acid, Malonate Ion, D-Malic acid)

Formic acidFMT
DrugBank DB01942

Pfam Families

PF07992Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6BPY RCSB PDB: 6BPY PDBe: 6BPY UniProt: A0A229Y1X4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Malonate IonMLI

DrugBank DB02201

D-Malic acidMLT

DrugBank DB03499

Shown in the structure viewer. Drug annotations from DrugDomain.