ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5znmA2 - ECOD Domain | ECOD

ECOD/Domains/e5znmA2

e5znmA2

UID: 002439615

PDB

Range: A:591-697
PDB: 5ZNM chain A(all domains)
UniProt: P17998 (all domains)
Gene: cda

Molecule: Colicin-D

3D Structure

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Related Domains

Browse other domains in Colicin_D →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMicrobial ribonucleases-like(234)

HH-groupColicin D nuclease domain(234.3)

TT-groupColicin D nuclease domain(234.3.1)

FFamilyColicin_D(234.3.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4
DrugBank DB14546
GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF11429Colicin_D

Colicin D

ClanCL0640Colicin_D_E5

External Links

ECOD PDB View: 5ZNM RCSB PDB: 5ZNM PDBe: 5ZNM UniProt: P17998

Downloads

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