ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5z48B1 - ECOD Domain | ECOD

ECOD/Domains/e5z48B1

e5z48B1

UID: 002439873

PDB

Range: B:-1-211
PDB: 5Z48 chain B(all domains)
UniProt: Q9RX25 (all domains)
Gene: pcp

Molecule: Pyrrolidone-carboxylate peptidase

3D Structure

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Related Domains

Browse other domains in Peptidase_C15 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupPyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)(2011.4)

TT-groupPyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)(2011.4.1)

FFamilyPeptidase_C15(2011.4.1.1)

Ligands

in contact, ≤ 4 Å

Pidolic acidPCA
drugDrugBank DB03088
Sodium ionNA
metal

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS

Pfam Families

PF01470Peptidase_C15

Pyroglutamyl peptidase

ClanCL0379PgaPase

External Links

ECOD PDB View: 5Z48 RCSB PDB: 5Z48 PDBe: 5Z48 UniProt: Q9RX25

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.