ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6cd5A1 - ECOD Domain | ECOD

ECOD/Domains/e6cd5A1

e6cd5A1

UID: 002439929

PDB

Range: A:42-166
PDB: 6CD5 chain A(all domains)
UniProt: O60885 (all domains)
Gene: BRD4

Molecule: Bromodomain-containing protein 4

3D Structure

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Related Domains

Browse other domains in Bromodomain →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBromodomain-like(633)

HH-groupBromodomain(633.1)

TT-groupBromodomain(633.1.1)

FFamilyBromodomain(633.1.1.1)

Ligands

in contact, ≤ 4 Å

11-cyclopentyl-2-[[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl-phenyl]amino]-5-methyl-pyrimido[4,5-b][1,4]benzodiazepin-6-oneR4L

+ 2 additives (Nitrate, 1,2-ETHANEDIOL)

NitrateNO3
DrugBank DB14049

Pfam Families

PF00439Bromodomain

Bromodomain

External Links

ECOD PDB View: 6CD5 RCSB PDB: 6CD5 PDBe: 6CD5 UniProt: O60885

Downloads

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1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.