ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6fgcA4 - ECOD Domain | ECOD

ECOD/Domains/e6fgcA4

e6fgcA4

UID: 002439976

PDB

Range: A:499-653
PDB: 6FGC chain A(all domains)
UniProt: Q03555 (all domains)
Gene: Gphn

Molecule: Gephyrin

3D Structure

Loading viewer...

Related Domains

Browse other domains in MoCF_biosynth →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMolybdenum cofactor biosynthesis proteins(7541)

HH-groupMolybdenum cofactor biosynthesis proteins(7541.1)

TT-groupMolybdenum cofactor biosynthesis proteins(7541.1.1)

FFamilyMoCF_biosynth(7541.1.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
ArtesunateD95
drugDrugBank DB09274
Calcium ion

Pfam Families

PF00994MoCF_biosynth

Probable molybdopterin binding domain

External Links

ECOD PDB View: 6FGC RCSB PDB: 6FGC PDBe: 6FGC UniProt: Q03555

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Chloride ionCL

(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 3 additives ((4r)-2-Methylpentane-2,4-Diol, Phosphate ion, Acetate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Phosphate ionPO4
DrugBank DB14523
Acetate ionACT

Shown in the structure viewer. Drug annotations from DrugDomain.