ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6g5fA1 - ECOD Domain | ECOD

ECOD/Domains/e6g5fA1

e6g5fA1

UID: 002439983

PDB

Range: A:2-441
PDB: 6G5F chain A(all domains)
UniProt: P10844 (all domains)
Gene: botB

Molecule: Botulinum neurotoxin type B

3D Structure

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Related Domains

Browse other domains in Peptidase_M27 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M27(2498.1.1.15)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Malonate Ion)

GlycerinGOL
DrugBank DB09462
Malonate IonMLI
DrugBank DB02201

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01742Peptidase_M27

Clostridial neurotoxin zinc protease

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 6G5F RCSB PDB: 6G5F PDBe: 6G5F UniProt: P10844

Downloads

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