ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6i1lD6 - ECOD Domain | ECOD

ECOD/Domains/e6i1lD6

e6i1lD6

UID: 002443140

PDB

Range: D:893-1084,D:1248-1300
PDB: 6I1L chain D(all domains)
UniProt: A0Q7Q2 (all domains)
Gene: cas12a

Molecule: CRISPR-associated endonuclease Cas12a

3D Structure

Loading viewer...

Related Domains

Browse other domains in RuvC_1 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRuvC_1(2484.1.1.84)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal
Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (Citric acid)

Citric acid

Pfam Families

RuvC nuclease domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 6I1L RCSB PDB: 6I1L PDBe: 6I1L UniProt: A0Q7Q2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.