ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6gzyA2 - ECOD Domain | ECOD

ECOD/Domains/e6gzyA2

e6gzyA2

UID: 002445568

PDB

Range: A:858-935
PDB: 6GZY chain A(all domains)
UniProt: Q96EP0 (all domains)
Gene: RNF31

Molecule: E3 ubiquitin-protein ligase RNF31

3D Structure

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Related Domains

Browse other domains in IBR_1 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupIBR domain(376.1.6)

FFamilyIBR_1(376.1.6.2)

Ligands

in contact, ≤ 4 Å

methyl 4-[(2-oxidanylidene-1,5,6,7-tetrahydrocyclopenta[b]pyridin-3-yl)carbonylamino]butanoateFHH
Sodium ionNA
metal
Zinc ionZN
metal

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Pfam Families

IBR domain

ClanCL0229RING

External Links

ECOD PDB View: 6GZY RCSB PDB: 6GZY PDBe: 6GZY UniProt: Q96EP0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.