ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6gzyB1 - ECOD Domain | ECOD

ECOD/Domains/e6gzyB1

e6gzyB1

UID: 002445569

PDB

Range: B:936-1072
PDB: 6GZY chain B(all domains)
UniProt: Q96EP0 (all domains)
Gene: RNF31

Molecule: E3 ubiquitin-protein ligase RNF31

3D Structure

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Related Domains

Browse other domains in E3_UbLigase_RBR →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupE3 ligase HOIP C-terminal domain(3773)

HH-groupE3 ligase HOIP C-terminal domain(3773.1)

TT-groupE3 ligase HOIP C-terminal domain(3773.1.1)

FFamilyE3_UbLigase_RBR(3773.1.1.1)

Ligands

in contact, ≤ 4 Å

methyl 4-[(2-oxidanylidene-1,5,6,7-tetrahydrocyclopenta[b]pyridin-3-yl)carbonylamino]butanoateFHH
Sodium ionNA
metal
Zinc ionZN

Pfam Families

PF18091E3_UbLigase_RBR

E3 Ubiquitin Ligase RBR C-terminal domain

ClanCL0214UBA

External Links

ECOD PDB View: 6GZY RCSB PDB: 6GZY PDBe: 6GZY UniProt: Q96EP0

Downloads

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metal

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.