ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6hmfB1 - ECOD Domain | ECOD

ECOD/Domains/e6hmfB1

e6hmfB1

UID: 002445597

PDB

Range: B:152-206,B:338-619
PDB: 6HMF chain B(all domains)
UniProt: Q9V2F3 (all domains)
Gene: polB

Molecule: DNA polymerase II small subunit

3D Structure

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Related Domains

Browse other domains in DNA_pol_E_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupCarbon-nitrogen hydrolase-like(246)

HH-groupMetallo-dependent phosphatases(246.2)

TT-groupMetallo-dependent phosphatases(246.2.1)

FFamilyDNA_pol_E_B(246.2.1.7)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
FE (III) IONFE
metal
Zinc ionZN

Pfam Families

PF04042DNA_pol_E_B

DNA polymerase alpha/epsilon subunit B

ClanCL0163Calcineurin

External Links

ECOD PDB View: 6HMF RCSB PDB: 6HMF PDBe: 6HMF UniProt: Q9V2F3

Downloads

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metal

+ 2 additives (Acetate, Cacodylate ion)

AcetateACT
DrugBank DB14511
Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.