ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1r4pE1 - ECOD Domain | ECOD

ECOD/Domains/e1r4pE1

e1r4pE1

UID: 000024471

PDB

Range: E:1-68
PDB: 1R4P chain E(all domains)
UniProt: P09386 (all domains)
Gene: stxB2

Molecule: shiga-like toxin type II B subunit

3D Structure

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Related Domains

Browse other domains in SLT_beta →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupBacterial enterotoxins(2.2)

TT-groupBacterial enterotoxins(2.2.1)

FFamilySLT_beta(2.2.1.3)

Ligands

in contact, ≤ 4 Å

3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE1PS
within 5 Å only

+ 1 additive (Formic acid)

Formic acidFMT
DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02258SLT_beta

Shiga-like toxin beta subunit

ClanCL0658OB_enterotoxin

External Links

ECOD PDB View: 1R4P RCSB PDB: 1R4P PDBe: 1R4P UniProt: P09386

Downloads

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