ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6nb3B2 - ECOD Domain | ECOD

ECOD/Domains/e6nb3B2

e6nb3B2

UID: 002447891

PDB

Range: B:46-357
PDB: 6NB3 chain B(all domains)
UniProt: A0A140AYW5 (all domains)
Gene: S

Molecule: Spike glycoprotein

3D Structure

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Related Domains

Browse other domains in bCoV_S1_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilybCoV_S1_N(10.1.1.39)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF16451bCoV_S1_N

Betacoronavirus-like spike glycoprotein S1, N-terminal

ClanCL0004Concanavalin

External Links

ECOD PDB View: 6NB3 RCSB PDB: 6NB3 PDBe: 6NB3 UniProt: A0A140AYW5

Downloads

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