ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6hohB1 - ECOD Domain | ECOD

ECOD/Domains/e6hohB1

e6hohB1

UID: 002453122

PDB

Range: B:-16-112
PDB: 6HOH chain B(all domains)
UniProt: Q8NEB9 (all domains)
Gene: PIK3C3

Molecule: Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein

3D Structure

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Related Domains

Browse other domains in ATG8 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyATG8(221.1.1.18)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Triethylene glycol)

Triethylene glycolPGE
DrugBank DB02327within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Autophagy protein Atg8 ubiquitin like

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 6HOH RCSB PDB: 6HOH PDBe: 6HOH UniProt: Q8NEB9

Downloads

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