ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6mdtB1 - ECOD Domain | ECOD

ECOD/Domains/e6mdtB1

e6mdtB1

UID: 002453201

PDB

Range: B:512-547,B:569-664
PDB: 6MDT chain B(all domains)
UniProt: B3UES2 (all domains)
Gene: env

Molecule: Transmembrane protein gp41

3D Structure

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Related Domains

Browse other domains in GP41 →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupMPER trimer(3567)

HH-groupMPER trimer(3567.1)

TT-groupMPER trimer(3567.1.1)

FFamilyGP41(3567.1.1.2)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral envelope protein

External Links

ECOD PDB View: 6MDT RCSB PDB: 6MDT PDBe: 6MDT UniProt: B3UES2

Downloads

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