ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6q4tA5 - ECOD Domain | ECOD

ECOD/Domains/e6q4tA5

e6q4tA5

UID: 002453330

PDB

Range: A:610-757
PDB: 6Q4T chain A(all domains)
UniProt: P77933 (all domains)
Gene: pol

Molecule: DNA polymerase,DNA polymerase,DNA polymerase

3D Structure

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Related Domains

Browse other domains in DNA_pol_B →

Classification

AArchitecturealpha bundles(a.7)

XX-group"thumb" domain in bacteriophage RB69-like DNA polymerase I(4969)

HH-group"thumb" domain in bacteriophage RB69-like DNA polymerase I(4969.1)

TT-group"thumb" domain in bacteriophage RB69-like DNA polymerase I(4969.1.1)

FFamilyDNA_pol_B(4969.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Nitrate, 1,2-ETHANEDIOL)

NitrateNO3
DrugBank DB14049
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00136DNA_pol_B

DNA polymerase family B

ClanCL0194DNA_pol_B-like

External Links

ECOD PDB View: 6Q4T RCSB PDB: 6Q4T PDBe: 6Q4T UniProt: P77933

Downloads

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