ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6q4tA6 - ECOD Domain | ECOD

ECOD/Domains/e6q4tA6

e6q4tA6

UID: 002453331

PDB

Range: A:447-500
PDB: 6Q4T chain A(all domains)
UniProt: P77933 (all domains)
Gene: pol

Molecule: DNA polymerase,DNA polymerase,DNA polymerase

3D Structure

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Related Domains

Browse other domains in DNA_pol_B →

Classification

AArchitecturealpha bundles(a.7)

XX-group"fingers" domain in bacteriophage RB69-like DNA polymerase I(4970)

HH-group"fingers" domain in bacteriophage RB69-like DNA polymerase I(4970.1)

TT-group"fingers" domain in bacteriophage RB69-like DNA polymerase I(4970.1.1)

FFamilyDNA_pol_B(4970.1.1.1)

Ligands

in contact, ≤ 4 Å

[[(2~{R},3~{S},5~{R})-5-[4-azanyl-5-[3-[2-(2-hydroxyethyloxy)ethanoylamino]prop-1-ynyl]pyrrolo[2,3-d]pyrimidin-7-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphateHHZ
MANGANESE (II) IONMN
metalwithin 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

PF00136DNA_pol_B

DNA polymerase family B

ClanCL0194DNA_pol_B-like

External Links

ECOD PDB View: 6Q4T RCSB PDB: 6Q4T PDBe: 6Q4T UniProt: P77933

Downloads

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1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.