ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6qa2E1 - ECOD Domain | ECOD

ECOD/Domains/e6qa2E1

e6qa2E1

UID: 002454740

PDB

Range: E:2-136
PDB: 6QA2 chain E(all domains)
UniProt: A5U5E1 (all domains)
Gene: ndk

Molecule: Nucleoside diphosphate kinase

3D Structure

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Related Domains

Browse other domains in NDK →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNucleoside diphosphate kinases(304.34)

TT-groupNucleoside diphosphate kinases(304.34.1)

FFamilyNDK(304.34.1.1)

Ligands

in contact, ≤ 4 Å

Tris(Hydroxyethyl)AminomethaneTAM
drugDrugBank DB04237

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

Nucleoside diphosphate kinase

External Links

ECOD PDB View: 6QA2 RCSB PDB: 6QA2 PDBe: 6QA2 UniProt: A5U5E1

Downloads

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Drug annotations from DrugDomain.