ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6akdA3 - ECOD Domain | ECOD

ECOD/Domains/e6akdA3

e6akdA3

UID: 002455583

PDB

Range: A:416-515
PDB: 6AKD chain A(all domains)
UniProt: A0A077KUW8 (all domains)
Gene: idnL7

Molecule: AMP-dependent synthetase and ligase

3D Structure

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Related Domains

Browse other domains in AMP-binding_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-lytic protease prodomain-like(327)

HH-groupa+b domain in acetyl-CoA synthetase-like proteins(327.5)

TT-groupa+b domain in acetyl-CoA synthetase-like proteins(327.5.1)

FFamilyAMP-binding_C(327.5.1.2)

Ligands

in contact, ≤ 4 Å

5'-O-(N-(Alanyl)sulfamoyl)adenosineA5A
drugDrugBank DB03376

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF13193AMP-binding_C

AMP-binding enzyme C-terminal domain

ClanCL0531AMP-binding_C

External Links

ECOD PDB View: 6AKD RCSB PDB: 6AKD PDBe: 6AKD UniProt: A0A077KUW8

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.