ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6nmbD1 - ECOD Domain | ECOD

ECOD/Domains/e6nmbD1

e6nmbD1

UID: 002456760

PDB

Range: D:5-242
PDB: 6NMB chain D(all domains)
UniProt: P00749 (all domains)
Gene: PLAU

Molecule: Urokinase-type plasminogen activator

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

Tranexamic acidAMH
drugDrugBank DB00302

+ 1 additive (Nitrate)

NitrateNO3
DrugBank DB14049

Shown in the structure viewer.

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 6NMB RCSB PDB: 6NMB PDBe: 6NMB UniProt: P00749

Downloads

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Drug annotations from DrugDomain.