ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6npaB1 - ECOD Domain | ECOD

ECOD/Domains/e6npaB1

e6npaB1

UID: 002456762

PDB

Range: B:8-194
PDB: 6NPA chain B(all domains)
UniProt: A0A4V8H040 (all domains)
Gene: tmpB

Molecule: TmpB, (R)-1-hydroxy-2-trimethylaminoethylphosphonate oxygenase

3D Structure

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Related Domains

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Classification

AArchitecturealpha complex topology(a.10)

XX-groupPDEase-like(131)

HH-groupHD-domain/PDEase-like(131.1)

TT-groupHD-domain/PDEase-like(131.1.1)

FFamilyHD(131.1.1.3)

Ligands

in contact, ≤ 4 Å

FE (III) IONFE
metal
FE (II) IONFE2
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

HD domain

ClanCL0237HD_PDEase

External Links

ECOD PDB View: 6NPA RCSB PDB: 6NPA PDBe: 6NPA UniProt: A0A4V8H040

Downloads

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