ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6gx9A1 - ECOD Domain | ECOD

ECOD/Domains/e6gx9A1

e6gx9A1

UID: 002458412

PDB

Range: A:2-923
PDB: 6GX9 chain A(all domains)
UniProt: Q9Y5L0 (all domains)
Gene: TNPO3

Molecule: Transportin-3

3D Structure

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Related Domains

Browse other domains in Xpo1, TPR_TNPO3_IPO13_2nd, TPR_TNPO3_IPO13_4th, TPR_TNPO3_IPO13_3rd →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyXpo1, TPR_TNPO3_IPO13_2nd, TPR_TNPO3_IPO13_4th, TPR_TNPO3_IPO13_3rd(109.4.1.1395)

Ligands

in contact, ≤ 4 Å

BicineBCN
drugDrugBank DB03709
BenzamidineBEN
Magnesium ionMG

Pfam Families

Exportin 1-like protein

ClanCL0020TPR

PF24138TPR_TNPO3_IPO13_2nd

Transportin-3/Importin-13 second TPR domain

ClanCL0020TPR

PF24139TPR_TNPO3_IPO13_4th

Transportin-3/Importin-13 fourth TPR domain

ClanCL0020TPR

PF24140TPR_TNPO3_IPO13_3rd

Transportin-3/Importin-13 third TPR domain

External Links

ECOD PDB View: 6GX9 RCSB PDB: 6GX9 PDBe: 6GX9 UniProt: Q9Y5L0

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.

TPR