ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6agtA1 - ECOD Domain | ECOD

ECOD/Domains/e6agtA1

e6agtA1

UID: 002459637

PDB

Range: A:223-582
PDB: 6AGT chain A(all domains)
UniProt: Q8IDJ8 (all domains)
Gene: PF3D7_1350100

Molecule: Lysine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2(314.1.1.1)

Ligands

in contact, ≤ 4 Å

LysineLYS
drugDrugBank DB00123
Malonic acidMLA
drugDrugBank DB02175
N-(cyclohexylmethyl)-4-oxo-4H-1-benzopyran-2-carboxamide

Pfam Families

PF00152tRNA-synt_2

tRNA synthetases class II (D, K and N)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 6AGT RCSB PDB: 6AGT PDBe: 6AGT UniProt: Q8IDJ8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

COBALT (II) IONCO

metal

+ 1 additive (Formic acid)

Formic acidFMT
DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.