ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ikiA1 - ECOD Domain | ECOD

ECOD/Domains/e6ikiA1

e6ikiA1

UID: 002459848

PDB

Range: A:35-168
PDB: 6IKI chain A(all domains)
UniProt: Q9I4L6 (all domains)
Gene: yfiB

Molecule: YfiB

3D Structure

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Related Domains

Browse other domains in OmpA →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupOmpA-like(301.3)

TT-groupOmpA-like(301.3.1)

FFamilyOmpA(301.3.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

OmpA family

External Links

ECOD PDB View: 6IKI RCSB PDB: 6IKI PDBe: 6IKI UniProt: Q9I4L6

Downloads

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