ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6m83A1 - ECOD Domain | ECOD

ECOD/Domains/e6m83A1

e6m83A1

UID: 002459902

PDB

Range: A:13-249
PDB: 6M83 chain A(all domains)
UniProt: P95748 (all domains)
Gene: tylM1

Molecule: dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_23, Methyltransf_25 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_23, Methyltransf_25(2003.1.5.151)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752
Chloride ionCL
5'-O-[(S)-hydroxy{[(S)-hydroxy(phenoxy)phosphoryl]oxy}phosphoryl]thymidineTLO

Pfam Families

PF13489Methyltransf_23

Methyltransferase domain

ClanCL0063NADP_Rossmann

PF13649Methyltransf_25

Methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6M83 RCSB PDB: 6M83 PDBe: 6M83 UniProt: P95748

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.