ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6dyyD1 - ECOD Domain | ECOD

ECOD/Domains/e6dyyD1

e6dyyD1

UID: 002463546

PDB

Range: D:-1-230
PDB: 6DYY chain D(all domains)
UniProt: Q9ZMY2 (all domains)
Gene: mtnN

Molecule: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase

3D Structure

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Related Domains

Browse other domains in PNP_UDP_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupPeptidyl-tRNA hydrolase-like(2011.2)

TT-groupPeptidyl-tRNA hydrolase-like(2011.2.1)

FFamilyPNP_UDP_1(2011.2.1.1)

Ligands

in contact, ≤ 4 Å

(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[3-(1-butyl-1H-1,2,3-triazol-4-yl)propyl]sulfanyl}methyl)pyrrolidin-3-olOS6
Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

PF01048PNP_UDP_1

Phosphorylase superfamily

ClanCL0408PUP

External Links

ECOD PDB View: 6DYY RCSB PDB: 6DYY PDBe: 6DYY UniProt: Q9ZMY2

Downloads

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1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.