ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6qdxC1 - ECOD Domain | ECOD

ECOD/Domains/e6qdxC1

e6qdxC1

UID: 002465630

PDB

Range: C:3-280
PDB: 6QDX chain C(all domains)
UniProt: P37634 (all domains)
Gene: rlmJ

Molecule: Ribosomal RNA large subunit methyltransferase J

3D Structure

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Related Domains

Browse other domains in RsmJ →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyRsmJ(2003.1.5.37)

Ligands

in contact, ≤ 4 Å

(2~{S})-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[[9-[(2~{S},3~{R},4~{S},5~{S})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-6-yl]amino]propyl]amino]-2-azanyl-butanoic acidHY8

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Ribosomal RNA large subunit methyltransferase D, RlmJ

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6QDX RCSB PDB: 6QDX PDBe: 6QDX UniProt: P37634

Downloads

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