ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6d9mA2 - ECOD Domain | ECOD

ECOD/Domains/e6d9mA2

e6d9mA2

UID: 002469726

PDB

Range: A:3-163
PDB: 6D9M chain A(all domains)
UniProt: P00720 (all domains)
Gene: E

Molecule: Fusion protein of Endolysin,Response receiver sensor diguanylate cyclase, GAF domain-containing

3D Structure

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Related Domains

Browse other domains in GGDEF →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyGGDEF(304.48.1.14)

Ligands

in contact, ≤ 4 Å

GuanosineGMP
drugDrugBank DB02857
Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Magnesium ion

Pfam Families

Diguanylate cyclase, GGDEF domain

ClanCL0276Nucleot_cyclase

External Links

ECOD PDB View: 6D9M RCSB PDB: 6D9M PDBe: 6D9M UniProt: P00720

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

PYROPHOSPHATE 2-POP

+ 2 additives (Glycerin, Acetate)

GlycerinGOL
DrugBank DB09462
AcetateACT
DrugBank DB14511within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.