ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6d08A1 - ECOD Domain | ECOD

ECOD/Domains/e6d08A1

e6d08A1

UID: 002470541

PDB

Range: A:1-54
PDB: 6D08 chain A(all domains)
UniProt: P83916 (all domains)
Gene: CBX1

Molecule: Chromobox protein homolog 1

3D Structure

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Related Domains

Browse other domains in Chromo →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupChromo domain-like(4.8)

TT-groupChromo domain-like(4.8.1)

FFamilyChromo(4.8.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546within 5 Å only

Shown in the structure viewer.

Pfam Families

Chromo (CHRromatin Organisation MOdifier) domain

ClanCL0010SH3

External Links

ECOD PDB View: 6D08 RCSB PDB: 6D08 PDBe: 6D08 UniProt: P83916

Downloads

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Drug annotations from DrugDomain.