ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6n94D1 - ECOD Domain | ECOD

ECOD/Domains/e6n94D1

e6n94D1

UID: 002470877

PDB

Range: D:2-261
PDB: 6N94 chain D(all domains)
UniProt: P52045 (all domains)
Gene: scpB

Molecule: Methylmalonyl-CoA decarboxylase

3D Structure

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Related Domains

Browse other domains in ECH_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupClpP/crotonase(2486)

HH-groupClpP/crotonase(2486.1)

TT-groupClpP/crotonase(2486.1.1)

FFamilyECH_1(2486.1.1.1)

Ligands

in contact, ≤ 4 Å

[1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylamino]-1-oxidanylidene-propan-2-ylidene]-bis(oxidanidyl)azaniumKGJ
NICKEL (II) IONNI
metal

Pfam Families

Enoyl-CoA hydratase/isomerase

ClanCL0127ClpP_crotonase

External Links

ECOD PDB View: 6N94 RCSB PDB: 6N94 PDBe: 6N94 UniProt: P52045

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Imidazole, Triethylene glycol)

ImidazoleIMD
DrugBank DB03366
Triethylene glycolPGE
DrugBank DB02327within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.