ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oxtC2 - ECOD Domain | ECOD

ECOD/Domains/e5oxtC2

e5oxtC2

UID: 002474409

PDB

Range: C:1-137
PDB: 5OXT chain C(all domains)
UniProt: B9W4V6 (all domains)
Gene: APO1

Molecule: UNSPECIFIC PEROXYGENASE

3D Structure

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Related Domains

Browse other domains in Peroxidase_2 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupEF-hand(108)

HH-groupCloroperoxidase(108.3)

TT-groupCloroperoxidase(108.3.1)

FFamilyPeroxidase_2(108.3.1.1)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
Chloride ionCL
Magnesium ionMG

Pfam Families

PF01328Peroxidase_2

Peroxidase, family 2

External Links

ECOD PDB View: 5OXT RCSB PDB: 5OXT PDBe: 5OXT UniProt: B9W4V6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

2-acetamido-2-deoxy-beta-D-glucopyranoseNAG

+ 1 additive (Acetate ion)

Acetate ionACT

Shown in the structure viewer. Drug annotations from DrugDomain.