ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6q2yB1 - ECOD Domain | ECOD

ECOD/Domains/e6q2yB1

e6q2yB1

UID: 002475396

PDB

Range: B:39-270
PDB: 6Q2Y chain B(all domains)
UniProt: C7C422 (all domains)
Gene: blaNDM-1

Molecule: Metallo-beta-lactamase type 2

3D Structure

Loading viewer...

Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
[5-(aminomethyl)-1-benzothiophen-2-yl]-tris(oxidanyl)boranuideHCQ
Zinc ionZN

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 6Q2Y RCSB PDB: 6Q2Y PDBe: 6Q2Y UniProt: C7C422

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (HEPES)

HEPESEPE
DrugBank DB16872

Shown in the structure viewer. Drug annotations from DrugDomain.