ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6q35B1 - ECOD Domain | ECOD

ECOD/Domains/e6q35B1

e6q35B1

UID: 002475397

PDB

Range: B:19-58,B:174-286
PDB: 6Q35 chain B(all domains)
UniProt: Q09HD0 (all domains)
Gene: blaGES-5

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Beta-lactamase2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyBeta-lactamase2(223.3.1.8)

Ligands

in contact, ≤ 4 Å

[5-(aminomethyl)-1-benzothiophen-2-yl]boronic acidHD5

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
DrugBank DB01093
1,2-ETHANEDIOLEDO

Pfam Families

PF13354Beta-lactamase2

Beta-lactamase enzyme family

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6Q35 RCSB PDB: 6Q35 PDBe: 6Q35 UniProt: Q09HD0

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.