ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6mryG1 - ECOD Domain | ECOD

ECOD/Domains/e6mryG1

e6mryG1

UID: 002476423

PDB

Range: G:1-48
PDB: 6MRY chain G(all domains)
UniProt: A0A4V8H030 (all domains)

Molecule: NoD173 defensin

3D Structure

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Related Domains

Browse other domains in Gamma-thionin →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupomega toxin-like(387)

HH-groupomega toxin-related(387.1)

TT-groupScorpion toxin-like(387.1.5)

FFamilyGamma-thionin(387.1.5.1)

Ligands

in contact, ≤ 4 Å

5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acidI3C
Chloride ionCL
within 5 Å only

+ 3 additives (Triethylene glycol, 1,2-ETHANEDIOL, Citrate anion)

Triethylene glycolPGE

Pfam Families

PF00304Gamma-thionin

Gamma-thionin family

ClanCL0054Knottin_1

External Links

ECOD PDB View: 6MRY RCSB PDB: 6MRY PDBe: 6MRY UniProt: A0A4V8H030

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02327within 5 Å only

1,2-ETHANEDIOLEDO

Citrate anionFLC

Shown in the structure viewer. Drug annotations from DrugDomain.