ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6rf3A1 - ECOD Domain | ECOD

ECOD/Domains/e6rf3A1

e6rf3A1

UID: 002476607

PDB

Range: A:3-275
PDB: 6RF3 chain A(all domains)
UniProt: N0DKS8 (all domains)
Gene: NaR

Molecule: Sodium pumping rhodopsin

3D Structure

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Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

EicosaneLFA
Sodium ionNA
metal
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoateOLC

+ 1 additive (octyl beta-D-glucopyranoside)

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 6RF3 RCSB PDB: 6RF3 PDBe: 6RF3 UniProt: N0DKS8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

octyl beta-D-glucopyranosideBOG

Shown in the structure viewer. Drug annotations from DrugDomain.