ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6oteA2 - ECOD Domain | ECOD

ECOD/Domains/e6oteA2

e6oteA2

UID: 002482421

PDB

Range: A:118-446
PDB: 6OTE chain A(all domains)
UniProt: Q5CVB3 (all domains)
Gene: cgd8_4720

Molecule: Seryl-tRNA synthetase, cytoplasmic

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2b →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2b(314.1.1.2)

Ligands

in contact, ≤ 4 Å

5'-O-(L-Serylsulfamoyl)adenosineSSA
drugDrugBank DB03869
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00587tRNA-synt_2b

tRNA synthetase class II core domain (G, H, P, S and T)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 6OTE RCSB PDB: 6OTE PDBe: 6OTE UniProt: Q5CVB3

Downloads

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