ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dvzC1 - ECOD Domain | ECOD

ECOD/Domains/e5dvzC1

e5dvzC1

UID: 002483917

PDB

Range: C:196-386
PDB: 5DVZ chain C(all domains)
UniProt: Q8U093 (all domains)
Gene: trpB1

Molecule: Tryptophan synthase beta chain 1

3D Structure

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Related Domains

Browse other domains in PALP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4)

TT-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4.1)

FFamilyPALP(2003.4.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Pyridoxal-phosphate dependent enzyme

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5DVZ RCSB PDB: 5DVZ PDBe: 5DVZ UniProt: Q8U093

Downloads

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