ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vm5B2 - ECOD Domain | ECOD

ECOD/Domains/e5vm5B2

e5vm5B2

UID: 002484479

PDB

Range: B:1-195
PDB: 5VM5 chain B(all domains)
UniProt: Q8U093 (all domains)
Gene: trpB1

Molecule: Tryptophan synthase beta chain 1

3D Structure

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Related Domains

Browse other domains in PALP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4)

TT-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4.1)

FFamilyPALP(2003.4.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINEPLS

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Pyridoxal-phosphate dependent enzyme

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5VM5 RCSB PDB: 5VM5 PDBe: 5VM5 UniProt: Q8U093

Downloads

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