ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6rk0B1 - ECOD Domain | ECOD

ECOD/Domains/e6rk0B1

e6rk0B1

UID: 002485466

PDB

Range: B:10-223
PDB: 6RK0 chain B(all domains)
UniProt: C1DK98 (all domains)
Gene: Avin_49040

Molecule: Uncharacterized protein

3D Structure

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Related Domains

Browse other domains in Pyridox_ox_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPyridox_ox_2(1.1.5.31)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
FerrohemeHEM
drugDrugBank DB18267

+ 1 additive (Sulfate ion)

Pfam Families

PF12900Pyridox_ox_2

Pyridoxamine 5'-phosphate oxidase

ClanCL0336FMN-binding

External Links

ECOD PDB View: 6RK0 RCSB PDB: 6RK0 PDBe: 6RK0 UniProt: C1DK98

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.