ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6f45D2 - ECOD Domain | ECOD

ECOD/Domains/e6f45D2

e6f45D2

UID: 002485691

RepresentativePDB

Range: D:46-113,D:131-150,D:230-249
PDB: 6F45 chain D(all domains)
UniProt: M1EBB2 (all domains)

Molecule: Receptor recognition protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in GP38 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupbeta-helix domain of fiber adhesin(207.2.2)

FFamilyGP38(207.2.2.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Imidazole)

(4r)-2-Methylpentane-2,4-DiolMPD

Pfam Families

Phage tail fibre adhesin Gp38

ClanCL0762GlyR

External Links

ECOD PDB View: 6F45 RCSB PDB: 6F45 PDBe: 6F45 UniProt: M1EBB2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03564

ImidazoleIMD

Shown in the structure viewer. Drug annotations from DrugDomain.