ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5zuuB1 - ECOD Domain | ECOD

ECOD/Domains/e5zuuB1

e5zuuB1

UID: 002487375

PDB

Range: B:229-371
PDB: 5ZUU chain B(all domains)
UniProt: A9LNK9 (all domains)
Gene: CPSF30

Molecule: 30-kDa cleavage and polyadenylation specificity factor 30

3D Structure

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Related Domains

Browse other domains in YTH →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupPUA domain(1.1.9)

FFamilyYTH(1.1.9.8)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (HEPES, Glycerin)

HEPESEPE
DrugBank DB16872
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

YT521-B-like domain

ClanCL0178PUA

External Links

ECOD PDB View: 5ZUU RCSB PDB: 5ZUU PDBe: 5ZUU UniProt: A9LNK9

Downloads

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