ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4h3sA3 - ECOD Domain | ECOD

ECOD/Domains/e4h3sA3

e4h3sA3

UID: 002488232

RepresentativePDB

Range: A:489-566,A:679-809
PDB: 4H3S chain A(all domains)
UniProt: P13188 (all domains)
Gene: GLN4

Molecule: Glutamine-tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1c_C2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupRibosomal protein L25-like(239)

HH-groupRibosomal protein L25-like(239.1)

TT-groupRibosomal protein L25-like(239.1.1)

FFamilytRNA-synt_1c_C2(239.1.1.6)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives (Acetate, Glycerol)

AcetateACT
DrugBank DB14511
GlycerolGOL

Shown in the structure viewer.

Pfam Families

PF20974tRNA-synt_1c_C2

tRNA synthetases class I (E and Q), anti-codon binding domain

ClanCL0733Ribosomal_L25

External Links

ECOD PDB View: 4H3S RCSB PDB: 4H3S PDBe: 4H3S UniProt: P13188

Downloads

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Drug annotations from DrugDomain.