ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dlpA1 - ECOD Domain | ECOD

ECOD/Domains/e4dlpA1

e4dlpA1

UID: 002488713

PDB

Range: A:3-348
PDB: 4DLP chain A(all domains)
UniProt: Q2YQ76 (all domains)
Gene: metG

Molecule: Aminoacyl-tRNA synthetase, class I:Aminoacyl-tRNA synthetase, class Ia:Methionyl-tRNA synthetase, class Ia

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1, tRNA-synt_1e, tRNA-synt_1g →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1, tRNA-synt_1e, tRNA-synt_1g(2005.1.1.55)

Ligands

in contact, ≤ 4 Å

SelenomethionineMSE
drugDrugBank DB11142

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00133tRNA-synt_1

tRNA synthetases class I (I, L, M and V)

ClanCL0039HUP

PF01406tRNA-synt_1e

tRNA synthetases class I (C) catalytic domain

ClanCL0039HUP

PF09334tRNA-synt_1g

tRNA synthetases class I (M)

ClanCL0039HUP

External Links

ECOD PDB View: 4DLP RCSB PDB: 4DLP PDBe: 4DLP UniProt: Q2YQ76

Downloads

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